src Directory Reference

Files
file	bge_matrix.c
	Implements a Matrix Structure for floating point data and a set of matrix routines for scoring a Gaussian Network.
file	bge_matrix.h [code]
	Function declarations for bge_matrix.c.
file	bge_posterior.c
	Describes a set of functions used for computing the posterior matrix of a continuous data set.
file	bge_posterior.h [code]
	Function declarations for bge_posterior.c.
file	bge_score.c
	Describes the main functions for scoring a node within a Gaussian Network using the bge scoring metric.
file	bge_score.h [code]
	Function declarations for bge_score.c.
file	bge_vector.c
	Defines a data structure that represents a vector with values of type double, as well as defining some vector operations.
file	bge_vector.h [code]
	Function declarations for bge_vector.c.
file	circuit_cuts.c
	Implements a method for finding and adding cluster cuts.
file	circuit_cuts.h [code]
	Function declarations for circuit_cuts.c.
file	cons_chordal.c
	constraint handler for chordal graph constraints
file	cons_chordal.h [code]
	constraint handler for chordal constraints
file	cons_ci.c
	constraint handler for conditional independence constraints
file	cons_ci.h [code]
	constraint handler for ci constraints
file	cons_dagcluster.c
	constraint handler for acyclicity constraints
file	cons_dagcluster.h [code]
	Function declarations for cons_dagcluster.c.
file	cons_distinguishedrep.c
	constraint handler for Markov equivalence class distinguished representative constraints
file	cons_distinguishedrep.h [code]
	constraint handler for distinguishedrep constraints
file	cons_lop.c
	example constraint handler for linear ordering constraints
file	cons_lop.h [code]
	constraint handler for linear ordering constraints
file	cons_partialordering.c
	example constraint handler for partial ordering constraints
file	cons_partialordering.h [code]
	constraint handler for partial ordering constraints
file	cons_vanilla.c
	constraint handler for vanilla constraints
file	cons_vanilla.h [code]
	constraint handler for vanilla constraints
file	convex4_cuts.c
	Implements the functions needed to add acyclicity constraints based on the convex hull of the family-variable polytope for 4 nodes.
file	convex4_cuts.h [code]
	Function declarations for convex4_cuts.c.
file	disp_clearcols.c
	Clearer column headings for GOBNILP.
file	disp_clearcols.h [code]
	Function declarations for disp_clearcols.c.
file	event_splitdag.c
	Provides a simple event handler to detect when the program should attempt to split dagcluster constraints into their individual strongly connected components.
file	event_splitdag.h [code]
	Function declarations for event_splitdag.c.
file	fractional_circuit_cuts.c
	Implements a method for finding and adding cluster cuts.
file	fractional_circuit_cuts.h [code]
	Function declarations for fractional_circuit_cuts.c.
file	gobnilp.c
	Main entry point for the program.
file	heur_sinks.c
	Defines all the functionality needed to find a heuristic solution to the Bayesian network problem.
file	heur_sinks.h [code]
	Function declarations for heur_sinks.c.
file	matroid_cuts.c
	Functions for finding matroid cuts.
file	matroid_cuts.h [code]
	Function declarations for matroid_cuts.c.
file	metadata.c
	Contains metadata relating to the problem that is not necessarily part of the LP that will be solved.
file	metadata.h [code]
	Function declarations for metadata.c.
file	model_averaging.c
	Implements the functions needed to perform model averaging over the n best Bayesian networks.
file	model_averaging.h [code]
	Function declarations for model_averaging.c.
file	output.c
	Contains all the functions related to writing data to files.
file	output.h [code]
	Function declarations for output.c.
file	parent_set_data.c
	Contains functions related to managing ParentSetData.
file	parent_set_data.h [code]
	Function and type declarations for parent_set_data.c.
file	pedigree_data.c
	Contains functions related to managing PedigreeData.
file	pedigree_data.h [code]
	Function and type declarations for pedigree_data.c.
file	pedigree_scorer.c
	Contains all the functions related to create scores for pedigrees in the program.
file	pedigree_scorer.h [code]
	Function declarations for pedigree_scorer.c.
file	pedigrees.c
	Contains all the functions related to the use of pedigrees in the program.
file	pedigrees.h [code]
	Function declarations for pedigrees.c.
file	probdata_bn.c
	Provides the core functionality for the Bayesian network learning problem.
file	probdata_bn.h [code]
	Function declarations for probdata_bn.c.
file	property_data.c
	Contains functions related to managing PropertyData.
file	property_data.h [code]
	Function and type declarations for property_data.c.
file	scoring.c
	Generates local scores from discrete data using AD trees.
file	scoring.h [code]
	Function declarations for scoring.c.
file	set_packing_cuts.c
	Functions to add "set packing" constraints for acyclicity constraints.
file	set_packing_cuts.h [code]
	Function declarations for set_packing_cuts.c.
file	solution_info.c
	Contains cached information about a solution to make it more faster and more convenient to reaccess this information.
file	solution_info.h [code]
	Function declarations for solution_info.c.
file	stack.c
	Implements a data type representing a stack of integers.
file	stack.h [code]
	Function declarations for stack.c.
file	subip_cuts.c
	Code using a sub-IP to find "cluster constraint" cutting planes.
file	subip_cuts.h [code]
	Function declarations for subip_cuts.c.
file	utils.c
	Contains some useful functions that may be needed in several other files.
file	utils.h [code]
	Function declarations for utils.c.
file	vector.c
	Implements a data type representing a resizable array of integers.
file	vector.h [code]
	Function declarations for vector.c.
file	vectorlist.c
	Implements a data type representing a resizable array of resizable arrays of integers.
file	vectorlist.h [code]
	Function declarations for vectorlist.c.